Detailed information of SNP:
|
SNP ID:
sf0402400735(Gbrowse)
Chromosome: chr04 Position: 2400735 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1409 | 68.28% | 31.72% |
| All Indica | 797 | 97.24% | 2.76% |
| All Japonica | 490 | 28.98% | 71.02% |
| Aus | 66 | 19.70% | 80.30% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 329 | 12.16% | 87.84% |
| Tropical Japonica | 94 | 72.34% | 27.66% |
| Japonica Intermediate | 67 | 50.75% | 49.25% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402400735 | C->A | INTERGENIC | None |