Detailed information of SNP:
SNP ID:
sf0402400783(Gbrowse)
Chromosome: chr04 Position: 2400783 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1418 | 97.18% | 2.82% |
All Indica | 799 | 99.75% | 0.25% |
All Japonica | 496 | 92.34% | 7.66% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 100.00% | 0.00% |
Indica II | 213 | 99.53% | 0.47% |
Indica Intermediate | 211 | 99.53% | 0.47% |
Temperate Japonica | 335 | 96.12% | 3.88% |
Tropical Japonica | 93 | 96.77% | 3.23% |
Japonica Intermediate | 68 | 67.65% | 32.35% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0402400783 | C->T | INTERGENIC | None |