Detailed information of SNP:
|
SNP ID:
sf0402412689(Gbrowse)
Chromosome: chr04 Position: 2412689 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1390 | 86.12% | 13.88% |
| All Indica | 788 | 93.78% | 6.22% |
| All Japonica | 484 | 73.35% | 26.65% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 367 | 92.92% | 7.08% |
| Indica II | 212 | 93.87% | 6.13% |
| Indica Intermediate | 209 | 95.22% | 4.78% |
| Temperate Japonica | 333 | 66.67% | 33.33% |
| Tropical Japonica | 86 | 89.53% | 10.47% |
| Japonica Intermediate | 65 | 86.15% | 13.85% |
| Group VI/Aromatic | 9 | 33.33% | 66.67% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402412689 | A->G | LOC_Os04g04990(LOC_Os04g04990.1) | Non-Synonymous SNP |