Detailed information of SNP:
|
SNP ID:
sf0402415733(Gbrowse)
Chromosome: chr04 Position: 2415733 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1383 | 97.69% | 2.31% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 461 | 93.71% | 6.29% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 306 | 94.77% | 5.23% |
| Tropical Japonica | 90 | 91.11% | 8.89% |
| Japonica Intermediate | 65 | 92.31% | 7.69% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402415733 | G->A | INTERGENIC | None |