Detailed information of SNP:
|
SNP ID:
sf0402427746(Gbrowse)
Chromosome: chr04 Position: 2427746 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 76.40% | 23.60% |
| All Indica | 797 | 89.96% | 10.04% |
| All Japonica | 491 | 51.12% | 48.88% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 209 | 66.51% | 33.49% |
| Temperate Japonica | 330 | 43.33% | 56.67% |
| Tropical Japonica | 94 | 68.09% | 31.91% |
| Japonica Intermediate | 67 | 65.67% | 34.33% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402427746 | A->G | INTERGENIC | None |