Detailed information of SNP:
|
SNP ID:
sf0402427853(Gbrowse)
Chromosome: chr04 Position: 2427853 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 84.04% | 15.96% |
| All Indica | 799 | 89.61% | 10.39% |
| All Japonica | 495 | 73.13% | 26.87% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 65.88% | 34.12% |
| Temperate Japonica | 334 | 74.55% | 25.45% |
| Tropical Japonica | 94 | 68.09% | 31.91% |
| Japonica Intermediate | 67 | 73.13% | 26.87% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402427853 | T->C | INTERGENIC | None |