Detailed information of SNP:
|
SNP ID:
sf0402450592(Gbrowse)
Chromosome: chr04 Position: 2450592 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 68.27% | 31.73% |
| All Indica | 799 | 62.83% | 37.17% |
| All Japonica | 497 | 74.04% | 25.96% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 375 | 62.40% | 37.60% |
| Indica II | 213 | 67.61% | 32.39% |
| Indica Intermediate | 211 | 58.77% | 41.23% |
| Temperate Japonica | 335 | 94.03% | 5.97% |
| Tropical Japonica | 94 | 20.21% | 79.79% |
| Japonica Intermediate | 68 | 50.00% | 50.00% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402450592 | G->A | INTERGENIC | None |