Detailed information of SNP:
|
SNP ID:
sf0402450671(Gbrowse)
Chromosome: chr04 Position: 2450671 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 61.71% | 38.29% |
| All Indica | 795 | 44.65% | 55.35% |
| All Japonica | 496 | 94.15% | 5.85% |
| Aus | 66 | 21.21% | 78.79% |
| Indica I | 371 | 39.89% | 60.11% |
| Indica II | 213 | 35.21% | 64.79% |
| Indica Intermediate | 211 | 62.56% | 37.44% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 69.89% | 30.11% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402450671 | C->T | INTERGENIC | None |