Detailed information of SNP:
|
SNP ID:
sf0402450801(Gbrowse)
Chromosome: chr04 Position: 2450801 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1409 | 94.54% | 5.46% |
| All Indica | 793 | 95.21% | 4.79% |
| All Japonica | 494 | 92.71% | 7.29% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 98.40% | 1.60% |
| Indica II | 210 | 97.62% | 2.38% |
| Indica Intermediate | 209 | 87.08% | 12.92% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 92 | 72.83% | 27.17% |
| Japonica Intermediate | 67 | 86.57% | 13.43% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402450801 | T->C | INTERGENIC | None |