Detailed information of SNP:
|
SNP ID:
sf0402453921(Gbrowse)
Chromosome: chr04 Position: 2453921 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1385 | 84.62% | 15.38% |
| All Indica | 798 | 99.62% | 0.38% |
| All Japonica | 464 | 55.82% | 44.18% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 305 | 42.62% | 57.38% |
| Tropical Japonica | 93 | 87.10% | 12.90% |
| Japonica Intermediate | 66 | 72.73% | 27.27% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402453921 | A->G | INTERGENIC | None |