Detailed information of SNP:
|
SNP ID:
sf0402454642(Gbrowse)
Chromosome: chr04 Position: 2454642 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1367 | 82.88% | 17.12% |
| All Indica | 752 | 72.61% | 27.39% |
| All Japonica | 497 | 95.17% | 4.83% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 366 | 66.67% | 33.33% |
| Indica II | 185 | 69.19% | 30.81% |
| Indica Intermediate | 201 | 86.57% | 13.43% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 76.60% | 23.40% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 89.19% | 10.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402454642 | C->A | INTERGENIC | None |