Detailed information of SNP:
|
SNP ID:
sf0402456994(Gbrowse)
Chromosome: chr04 Position: 2456994 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 78.11% | 21.89% |
| All Indica | 798 | 97.62% | 2.38% |
| All Japonica | 495 | 43.03% | 56.97% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 93.33% | 6.67% |
| Temperate Japonica | 334 | 30.84% | 69.16% |
| Tropical Japonica | 93 | 73.12% | 26.88% |
| Japonica Intermediate | 68 | 61.76% | 38.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402456994 | T->A | INTERGENIC | None |