Detailed information of SNP:
|
SNP ID:
sf0402458468(Gbrowse)
Chromosome: chr04 Position: 2458468 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 90.61% | 9.39% |
| All Indica | 799 | 95.49% | 4.51% |
| All Japonica | 494 | 80.97% | 19.03% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 85.78% | 14.22% |
| Temperate Japonica | 332 | 79.22% | 20.78% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402458468 | A->G | INTERGENIC | None |