Detailed information of SNP:
|
SNP ID:
sf0402459483(Gbrowse)
Chromosome: chr04 Position: 2459483 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 58.27% | 41.73% |
| All Indica | 797 | 86.45% | 13.55% |
| All Japonica | 495 | 19.60% | 80.40% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 209 | 57.89% | 42.11% |
| Temperate Japonica | 334 | 3.29% | 96.71% |
| Tropical Japonica | 93 | 60.22% | 39.78% |
| Japonica Intermediate | 68 | 44.12% | 55.88% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402459483 | T->G | INTERGENIC | None |