Detailed information of SNP:
|
SNP ID:
sf0402463392(Gbrowse)
Chromosome: chr04 Position: 2463392 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 50.35% | 49.65% |
| All Indica | 799 | 83.48% | 16.52% |
| All Japonica | 496 | 5.24% | 94.76% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 89.20% | 10.80% |
| Indica Intermediate | 211 | 51.66% | 48.34% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 93 | 5.38% | 94.62% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402463392 | G->A | INTERGENIC | None |