Detailed information of SNP:
|
SNP ID:
sf0402463467(Gbrowse)
Chromosome: chr04 Position: 2463467 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 55.19% | 44.81% |
| All Indica | 797 | 83.94% | 16.06% |
| All Japonica | 495 | 7.07% | 92.93% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 212 | 90.57% | 9.43% |
| Indica Intermediate | 210 | 52.38% | 47.62% |
| Temperate Japonica | 333 | 2.70% | 97.30% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 26.47% | 73.53% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402463467 | G->A | INTERGENIC | None |