Detailed information of SNP:
|
SNP ID:
sf0402466657(Gbrowse)
Chromosome: chr04 Position: 2466657 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 95.43% | 4.57% |
| All Indica | 798 | 94.86% | 5.14% |
| All Japonica | 479 | 96.03% | 3.97% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 210 | 84.29% | 15.71% |
| Temperate Japonica | 333 | 99.70% | 0.30% |
| Tropical Japonica | 90 | 85.56% | 14.44% |
| Japonica Intermediate | 56 | 91.07% | 8.93% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402466657 | C->T | INTERGENIC | None |