Detailed information of SNP:
|
SNP ID:
sf0402468208(Gbrowse)
Chromosome: chr04 Position: 2468208 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 73.73% | 26.27% |
| All Indica | 797 | 98.87% | 1.13% |
| All Japonica | 496 | 31.25% | 68.75% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 209 | 99.04% | 0.96% |
| Temperate Japonica | 334 | 23.35% | 76.65% |
| Tropical Japonica | 94 | 51.06% | 48.94% |
| Japonica Intermediate | 68 | 42.65% | 57.35% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402468208 | C->A | INTERGENIC | None |