Detailed information of SNP:
|
SNP ID:
sf0402470113(Gbrowse)
Chromosome: chr04 Position: 2470113 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 89.00% | 11.00% |
| All Indica | 799 | 93.99% | 6.01% |
| All Japonica | 496 | 79.64% | 20.36% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 94.13% | 5.87% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 79.40% | 20.60% |
| Tropical Japonica | 93 | 74.19% | 25.81% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402470113 | G->A | INTERGENIC | None |