Detailed information of SNP:
|
SNP ID:
sf0402475377(Gbrowse)
Chromosome: chr04 Position: 2475377 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 78.29% | 21.71% |
| All Indica | 795 | 97.61% | 2.39% |
| All Japonica | 496 | 46.17% | 53.83% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 211 | 97.63% | 2.37% |
| Indica Intermediate | 209 | 95.69% | 4.31% |
| Temperate Japonica | 334 | 42.81% | 57.19% |
| Tropical Japonica | 94 | 58.51% | 41.49% |
| Japonica Intermediate | 68 | 45.59% | 54.41% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402475377 | A->G | INTERGENIC | None |