Detailed information of SNP:
|
SNP ID:
sf0402495269(Gbrowse)
Chromosome: chr04 Position: 2495269 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 87.03% | 12.97% |
| All Indica | 799 | 93.24% | 6.76% |
| All Japonica | 497 | 86.32% | 13.68% |
| Aus | 67 | 46.27% | 53.73% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 89.10% | 10.90% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 46.81% | 53.19% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402495269 | G->T | INTERGENIC | None |