Detailed information of SNP:
|
SNP ID:
sf0402504653(Gbrowse)
Chromosome: chr04 Position: 2504653 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1402 | 67.76% | 32.24% |
| All Indica | 784 | 82.40% | 17.60% |
| All Japonica | 495 | 42.22% | 57.78% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 92.53% | 7.47% |
| Indica II | 211 | 71.09% | 28.91% |
| Indica Intermediate | 198 | 75.25% | 24.75% |
| Temperate Japonica | 333 | 27.03% | 72.97% |
| Tropical Japonica | 94 | 72.34% | 27.66% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402504653 | C->T | INTERGENIC | None |