Detailed information of SNP:
|
SNP ID:
sf0402518738(Gbrowse)
Chromosome: chr04 Position: 2518738 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 66.06% | 33.94% |
| All Indica | 797 | 90.21% | 9.79% |
| All Japonica | 497 | 24.14% | 75.86% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 212 | 94.81% | 5.19% |
| Indica Intermediate | 210 | 77.14% | 22.86% |
| Temperate Japonica | 335 | 31.64% | 68.36% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402518738 | G->C | INTERGENIC | None |