Detailed information of SNP:
|
SNP ID:
sf0402524985(Gbrowse)
Chromosome: chr04 Position: 2524985 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1287 | 61.85% | 38.15% |
| All Indica | 679 | 67.01% | 32.99% |
| All Japonica | 492 | 54.67% | 45.33% |
| Aus | 63 | 74.60% | 25.40% |
| Indica I | 306 | 76.47% | 23.53% |
| Indica II | 193 | 46.63% | 53.37% |
| Indica Intermediate | 180 | 72.78% | 27.22% |
| Temperate Japonica | 335 | 73.73% | 26.27% |
| Tropical Japonica | 90 | 14.44% | 85.56% |
| Japonica Intermediate | 67 | 13.43% | 86.57% |
| Group VI/Aromatic | 13 | 61.54% | 38.46% |
| Intermediate | 40 | 42.50% | 57.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402524985 | C->T | LOC_Os04g05104(LOC_Os04g05104.1) | Synonymous |