Detailed information of SNP:
|
SNP ID:
sf0402542297(Gbrowse)
Chromosome: chr04 Position: 2542297 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1379 | 65.26% | 34.74% |
| All Indica | 792 | 96.72% | 3.28% |
| All Japonica | 470 | 8.30% | 91.70% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 374 | 98.66% | 1.34% |
| Indica II | 208 | 98.08% | 1.92% |
| Indica Intermediate | 210 | 91.90% | 8.10% |
| Temperate Japonica | 333 | 1.20% | 98.80% |
| Tropical Japonica | 75 | 36.00% | 64.00% |
| Japonica Intermediate | 62 | 12.90% | 87.10% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 38 | 65.79% | 34.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402542297 | A->G | LOC_Os04g05130(LOC_Os04g05130.1) | INTRON |