Detailed information of SNP:
|
SNP ID:
sf0402597098(Gbrowse)
Chromosome: chr04 Position: 2597098 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1347 | 91.24% | 8.76% |
| All Indica | 753 | 88.05% | 11.95% |
| All Japonica | 482 | 98.13% | 1.87% |
| Aus | 60 | 71.67% | 28.33% |
| Indica I | 367 | 92.92% | 7.08% |
| Indica II | 198 | 82.32% | 17.68% |
| Indica Intermediate | 188 | 84.57% | 15.43% |
| Temperate Japonica | 331 | 99.40% | 0.60% |
| Tropical Japonica | 88 | 94.32% | 5.68% |
| Japonica Intermediate | 63 | 96.83% | 3.17% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 38 | 97.37% | 2.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402597098 | T->C | LOC_Os04g05210(LOC_Os04g05210.1) | INTRON |