Detailed information of SNP:
|
SNP ID:
sf0402645127(Gbrowse)
Chromosome: chr04 Position: 2645127 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 94.75% | 5.25% |
| All Indica | 795 | 93.58% | 6.42% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 62 | 67.74% | 32.26% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 90.14% | 9.86% |
| Indica Intermediate | 207 | 85.51% | 14.49% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402645127 | G->A | LOC_Os04g05330(LOC_Os04g05330.1) | Synonymous |