Detailed information of SNP:
|
SNP ID:
sf0402645325(Gbrowse)
Chromosome: chr04 Position: 2645325 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1398 | 51.29% | 48.71% |
| All Indica | 786 | 76.59% | 23.41% |
| All Japonica | 490 | 17.35% | 82.65% |
| Aus | 66 | 10.61% | 89.39% |
| Indica I | 375 | 92.53% | 7.47% |
| Indica II | 208 | 74.52% | 25.48% |
| Indica Intermediate | 203 | 49.26% | 50.74% |
| Temperate Japonica | 333 | 6.01% | 93.99% |
| Tropical Japonica | 91 | 42.86% | 57.14% |
| Japonica Intermediate | 66 | 39.39% | 60.61% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402645325 | A->G | LOC_Os04g05330(LOC_Os04g05330.1) | Synonymous |