Detailed information of SNP:
|
SNP ID:
sf0402658657(Gbrowse)
Chromosome: chr04 Position: 2658657 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 93.78% | 6.22% |
| All Indica | 797 | 94.60% | 5.40% |
| All Japonica | 495 | 99.60% | 0.40% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 209 | 84.21% | 15.79% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402658657 | C->A | LOC_Os04g05350(LOC_Os04g05350.1) | Synonymous |