Detailed information of SNP:
|
SNP ID:
sf0402667428(Gbrowse)
Chromosome: chr04 Position: 2667428 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1400 | 56.14% | 43.86% |
| All Indica | 791 | 81.16% | 18.84% |
| All Japonica | 486 | 24.49% | 75.51% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 92.80% | 7.20% |
| Indica II | 208 | 85.10% | 14.90% |
| Indica Intermediate | 208 | 56.25% | 43.75% |
| Temperate Japonica | 330 | 8.48% | 91.52% |
| Tropical Japonica | 91 | 65.93% | 34.07% |
| Japonica Intermediate | 65 | 47.69% | 52.31% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402667428 | A->G | INTERGENIC | None |