Detailed information of SNP:
|
SNP ID:
sf0402673390(Gbrowse)
Chromosome: chr04 Position: 2673390 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 97.65% | 2.35% |
| All Indica | 796 | 98.62% | 1.38% |
| All Japonica | 486 | 95.88% | 4.12% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 210 | 98.10% | 1.90% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 324 | 95.99% | 4.01% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402673390 | G->A | LOC_Os04g05370(LOC_Os04g05370.1) | INTRON |