Detailed information of SNP:
|
SNP ID:
sf0402680013(Gbrowse)
Chromosome: chr04 Position: 2680013 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1325 | 92.38% | 7.62% |
| All Indica | 745 | 89.53% | 10.47% |
| All Japonica | 466 | 97.00% | 3.00% |
| Aus | 63 | 87.30% | 12.70% |
| Indica I | 372 | 95.97% | 4.03% |
| Indica II | 185 | 85.41% | 14.59% |
| Indica Intermediate | 188 | 80.85% | 19.15% |
| Temperate Japonica | 326 | 98.77% | 1.23% |
| Tropical Japonica | 77 | 93.51% | 6.49% |
| Japonica Intermediate | 63 | 92.06% | 7.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 97.30% | 2.70% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402680013 | T->C | LOC_Os04g05370(LOC_Os04g05370.1) | Non-Synonymous SNP |