Detailed information of SNP:
|
SNP ID:
sf0402696859(Gbrowse)
Chromosome: chr04 Position: 2696859 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 89.56% | 10.44% |
| All Indica | 798 | 85.59% | 14.41% |
| All Japonica | 496 | 94.76% | 5.24% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 212 | 81.13% | 18.87% |
| Indica Intermediate | 211 | 71.56% | 28.44% |
| Temperate Japonica | 334 | 98.50% | 1.50% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402696859 | G->T | INTERGENIC | None |