Detailed information of SNP:
|
SNP ID:
sf0402716189(Gbrowse)
Chromosome: chr04 Position: 2716189 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 78.55% | 21.45% |
| All Indica | 799 | 98.12% | 1.88% |
| All Japonica | 495 | 44.65% | 55.35% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 24.78% | 75.22% |
| Tropical Japonica | 93 | 87.10% | 12.90% |
| Japonica Intermediate | 67 | 85.07% | 14.93% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402716189 | C->A | LOC_Os04g05420(LOC_Os04g05420.1) | Non-Synonymous SNP |