Detailed information of SNP:
|
SNP ID:
sf0402718044(Gbrowse)
Chromosome: chr04 Position: 2718044 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1350 | 71.11% | 28.89% |
| All Indica | 759 | 86.82% | 13.18% |
| All Japonica | 480 | 43.96% | 56.04% |
| Aus | 58 | 91.38% | 8.62% |
| Indica I | 367 | 88.01% | 11.99% |
| Indica II | 205 | 90.73% | 9.27% |
| Indica Intermediate | 187 | 80.21% | 19.79% |
| Temperate Japonica | 331 | 25.38% | 74.62% |
| Tropical Japonica | 88 | 87.50% | 12.50% |
| Japonica Intermediate | 61 | 81.97% | 18.03% |
| Group VI/Aromatic | 12 | 33.33% | 66.67% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402718044 | C->T | INTERGENIC | None |