Detailed information of SNP:
|
SNP ID:
sf0402764796(Gbrowse)
Chromosome: chr04 Position: 2764796 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1388 | 91.79% | 8.21% |
| All Indica | 785 | 96.43% | 3.57% |
| All Japonica | 484 | 83.68% | 16.32% |
| Aus | 63 | 93.65% | 6.35% |
| Indica I | 372 | 98.12% | 1.88% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 201 | 93.03% | 6.97% |
| Temperate Japonica | 330 | 93.33% | 6.67% |
| Tropical Japonica | 90 | 51.11% | 48.89% |
| Japonica Intermediate | 64 | 79.69% | 20.31% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402764796 | A->C | INTERGENIC | None |