Detailed information of SNP:
|
SNP ID:
sf0402778983(Gbrowse)
Chromosome: chr04 Position: 2778983 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1385 | 57.69% | 42.31% |
| All Indica | 787 | 90.98% | 9.02% |
| All Japonica | 486 | 10.49% | 89.51% |
| Aus | 58 | 10.34% | 89.66% |
| Indica I | 374 | 98.93% | 1.07% |
| Indica II | 206 | 79.61% | 20.39% |
| Indica Intermediate | 207 | 87.92% | 12.08% |
| Temperate Japonica | 328 | 6.71% | 93.29% |
| Tropical Japonica | 90 | 8.89% | 91.11% |
| Japonica Intermediate | 68 | 30.88% | 69.12% |
| Group VI/Aromatic | 12 | 8.33% | 91.67% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402778983 | G->T | INTERGENIC | None |