Detailed information of SNP:
|
SNP ID:
sf0402818639(Gbrowse)
Chromosome: chr04 Position: 2818639 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1398 | 86.19% | 13.81% |
| All Indica | 782 | 93.22% | 6.78% |
| All Japonica | 494 | 73.48% | 26.52% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 205 | 88.78% | 11.22% |
| Indica Intermediate | 203 | 85.22% | 14.78% |
| Temperate Japonica | 332 | 62.65% | 37.35% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402818639 | G->A | INTERGENIC | None |