Detailed information of SNP:
|
SNP ID:
sf0402819100(Gbrowse)
Chromosome: chr04 Position: 2819100 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1397 | 87.47% | 12.53% |
| All Indica | 792 | 93.06% | 6.94% |
| All Japonica | 484 | 75.83% | 24.17% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 209 | 89.00% | 11.00% |
| Indica Intermediate | 209 | 85.17% | 14.83% |
| Temperate Japonica | 323 | 65.63% | 34.37% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402819100 | G->C | INTERGENIC | None |