Detailed information of SNP:
|
SNP ID:
sf0402820139(Gbrowse)
Chromosome: chr04 Position: 2820139 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 94.11% | 5.89% |
| All Indica | 793 | 95.59% | 4.41% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 64 | 39.06% | 60.94% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 91.51% | 8.49% |
| Indica Intermediate | 206 | 92.23% | 7.77% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402820139 | A->G | INTERGENIC | None |