Detailed information of SNP:
|
SNP ID:
sf0402821785(Gbrowse)
Chromosome: chr04 Position: 2821785 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 95.69% | 4.31% |
| All Indica | 798 | 98.12% | 1.88% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 65 | 33.85% | 66.15% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 97.17% | 2.83% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402821785 | C->T | LOC_Os04g05580(LOC_Os04g05580.1) | SNPs that introduce initiation codons |