Detailed information of SNP:
|
SNP ID:
sf0402822828(Gbrowse)
Chromosome: chr04 Position: 2822828 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1401 | 88.94% | 11.06% |
| All Indica | 792 | 98.36% | 1.64% |
| All Japonica | 490 | 80.20% | 19.80% |
| Aus | 64 | 34.38% | 65.62% |
| Indica I | 371 | 100.00% | 0.00% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 209 | 94.74% | 5.26% |
| Temperate Japonica | 331 | 74.32% | 25.68% |
| Tropical Japonica | 92 | 92.39% | 7.61% |
| Japonica Intermediate | 67 | 92.54% | 7.46% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402822828 | T->G | LOC_Os04g05580(LOC_Os04g05580.1) | INTRON |