Detailed information of SNP:
|
SNP ID:
sf0402914515(Gbrowse)
Chromosome: chr04 Position: 2914515 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 85.44% | 14.56% |
| All Indica | 798 | 93.36% | 6.64% |
| All Japonica | 494 | 73.89% | 26.11% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 210 | 82.38% | 17.62% |
| Temperate Japonica | 334 | 92.81% | 7.19% |
| Tropical Japonica | 93 | 19.35% | 80.65% |
| Japonica Intermediate | 67 | 55.22% | 44.78% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402914515 | G->A | LOC_Os04g05710(LOC_Os04g05710.1) | Non-Synonymous SNP |