Detailed information of SNP:
|
SNP ID:
sf0402915189(Gbrowse)
Chromosome: chr04 Position: 2915189 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1304 | 72.78% | 27.22% |
| All Indica | 703 | 84.21% | 15.79% |
| All Japonica | 481 | 51.56% | 48.44% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 295 | 78.98% | 21.02% |
| Indica II | 203 | 89.66% | 10.34% |
| Indica Intermediate | 205 | 86.34% | 13.66% |
| Temperate Japonica | 321 | 33.33% | 66.67% |
| Tropical Japonica | 93 | 91.40% | 8.60% |
| Japonica Intermediate | 67 | 83.58% | 16.42% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402915189 | A->G | LOC_Os04g05710(LOC_Os04g05710.1) | Synonymous |