Detailed information of SNP:



SNP ID: sf0402916810(Gbrowse)

Chromosome: chr04

Position: 2916810
Major allele: T

Minor allele: C

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1371 56.75% 43.25%
All Indica773 32.34% 67.66%
All Japonica480 87.92% 12.08%
Aus63 98.41% 1.59%
Indica I373 7.51% 92.49%
Indica II198 45.45% 54.55%
Indica Intermediate202 65.35% 34.65%
Temperate Japonica320 83.44% 16.56%
Tropical Japonica94 97.87% 2.13%
Japonica Intermediate66 95.45% 4.55%
Group VI/Aromatic14 92.86% 7.14%
Intermediate41 75.61% 24.39%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0402916810 T->C LOC_Os04g05710(LOC_Os04g05710.1) INTRON