Detailed information of SNP:
|
SNP ID:
sf0402916810(Gbrowse)
Chromosome: chr04 Position: 2916810 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1371 | 56.75% | 43.25% |
| All Indica | 773 | 32.34% | 67.66% |
| All Japonica | 480 | 87.92% | 12.08% |
| Aus | 63 | 98.41% | 1.59% |
| Indica I | 373 | 7.51% | 92.49% |
| Indica II | 198 | 45.45% | 54.55% |
| Indica Intermediate | 202 | 65.35% | 34.65% |
| Temperate Japonica | 320 | 83.44% | 16.56% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 66 | 95.45% | 4.55% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402916810 | T->C | LOC_Os04g05710(LOC_Os04g05710.1) | INTRON |