Detailed information of SNP:
|
SNP ID:
sf0402937800(Gbrowse)
Chromosome: chr04 Position: 2937800 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 55.04% | 44.96% |
| All Indica | 787 | 28.34% | 71.66% |
| All Japonica | 490 | 94.29% | 5.71% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 373 | 9.65% | 90.35% |
| Indica II | 208 | 33.65% | 66.35% |
| Indica Intermediate | 206 | 56.80% | 43.20% |
| Temperate Japonica | 334 | 94.91% | 5.09% |
| Tropical Japonica | 88 | 92.05% | 7.95% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402937800 | C->A | INTERGENIC | None |