Detailed information of SNP:
|
SNP ID:
sf0402973207(Gbrowse)
Chromosome: chr04 Position: 2973207 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1378 | 87.74% | 12.26% |
| All Indica | 790 | 81.65% | 18.35% |
| All Japonica | 494 | 96.15% | 3.85% |
| Aus | 39 | 92.31% | 7.69% |
| Indica I | 370 | 77.03% | 22.97% |
| Indica II | 212 | 89.15% | 10.85% |
| Indica Intermediate | 208 | 82.21% | 17.79% |
| Temperate Japonica | 333 | 96.70% | 3.30% |
| Tropical Japonica | 93 | 94.62% | 5.38% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402973207 | A->G | LOC_Os04g05800(LOC_Os04g05800.1) | INTRON |