Detailed information of SNP:
|
SNP ID:
sf0402976720(Gbrowse)
Chromosome: chr04 Position: 2976720 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1378 | 82.87% | 17.13% |
| All Indica | 771 | 73.80% | 26.20% |
| All Japonica | 485 | 94.64% | 5.36% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 357 | 68.91% | 31.09% |
| Indica II | 207 | 75.36% | 24.64% |
| Indica Intermediate | 207 | 80.68% | 19.32% |
| Temperate Japonica | 323 | 94.43% | 5.57% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402976720 | G->A | LOC_Os04g05800(LOC_Os04g05800.1) | Non-Synonymous SNP |