Detailed information of SNP:
|
SNP ID:
sf0402978242(Gbrowse)
Chromosome: chr04 Position: 2978242 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1409 | 97.73% | 2.27% |
| All Indica | 789 | 96.45% | 3.55% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 371 | 94.88% | 5.12% |
| Indica II | 211 | 98.58% | 1.42% |
| Indica Intermediate | 207 | 97.10% | 2.90% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402978242 | T->C | INTERGENIC | None |