Detailed information of SNP:
|
SNP ID:
sf0402982150(Gbrowse)
Chromosome: chr04 Position: 2982150 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1287 | 92.15% | 7.85% |
| All Indica | 688 | 88.81% | 11.19% |
| All Japonica | 493 | 97.57% | 2.43% |
| Aus | 63 | 88.89% | 11.11% |
| Indica I | 345 | 90.14% | 9.86% |
| Indica II | 178 | 87.08% | 12.92% |
| Indica Intermediate | 165 | 87.88% | 12.12% |
| Temperate Japonica | 333 | 98.80% | 1.20% |
| Tropical Japonica | 93 | 92.47% | 7.53% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 7 | 85.71% | 14.29% |
| Intermediate | 36 | 88.89% | 11.11% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402982150 | C->T | INTERGENIC | None |